Synthetic oligonucleotide hybridization probes to diagnose hop stunt viroid strains and citrus exocortis viroid.
Identifieur interne : 000A27 ( Main/Exploration ); précédent : 000A26; suivant : 000A28Synthetic oligonucleotide hybridization probes to diagnose hop stunt viroid strains and citrus exocortis viroid.
Auteurs : T. Sano [Japon] ; H. Kudo ; T. Sugimoto ; E. ShikataSource :
- Journal of virological methods [ 0166-0934 ] ; 1988.
Descripteurs français
- KwdFr :
- MESH :
- génétique : ARN viral, Virus des plantes.
- isolement et purification : Virus des plantes.
- Hybridation d'acides nucléiques, Oligodésoxyribonucléotides, Spécificité d'espèce, Séquence nucléotidique.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : RNA, Viral.
- chemical : Oligodeoxyribonucleotides.
- genetics : Plant Viruses.
- isolation & purification : Plant Viruses.
- Base Sequence, Nucleic Acid Hybridization, Species Specificity.
Abstract
Four species of synthetic oligonucleotide probes for the diagnosis of hop stunt viroid (HSV) and citrus exocortis viroid (CEV) were devised. Probe HSV-1 detected all the members of HSV group, such as HSV-hop, HSV-grapevine, HSV-cucumber, HSV-citrus and a viroid-like RNA isolated from plum trees affected by plum dapple fruit disease. Probe HSV-2 discriminated HSV-grapevine from the other members of HSV group. HSV-hop and HSV-grapevine consist of the same numbers of nucleotides, with only one nucleotide exchange. It was also shown that the two viroids were indistinguishable by their biological and physicochemical properties. However, by using probe HSV-2, HSV-hop and HSV-grapevine were apparently differentiated. Probe CEV-1 detected all the members of potato spindle tuber viroid (PSTV) group, such as PSTV, CEV and chrysanthemum stunt viroid (CSV). Probe CEV-2 discriminated CEV from the other members of PSTV group. It is thus emphasized that synthetic oligonucleotide probes are useful for the diagnosis of viroids and their related strains. It was discussed that the method can be used for the diagnosis of viruses and their related strains.
DOI: 10.1016/0166-0934(88)90154-1
PubMed: 3366851
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Shikata</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="1988">1988</date><idno type="RBID">pubmed:3366851</idno><idno type="pmid">3366851</idno><idno type="doi">10.1016/0166-0934(88)90154-1</idno><idno type="wicri:Area/Main/Corpus">000A28</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000A28</idno><idno type="wicri:Area/Main/Curation">000A28</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000A28</idno><idno type="wicri:Area/Main/Exploration">000A28</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Synthetic oligonucleotide hybridization probes to diagnose hop stunt viroid strains and citrus exocortis viroid.</title><author><name sortKey="Sano, T" sort="Sano, T" uniqKey="Sano T" first="T" last="Sano">T. Sano</name><affiliation wicri:level="1"><nlm:affiliation>Department of Botany, Hokkaido University, Sapporo, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Department of Botany, Hokkaido University, Sapporo</wicri:regionArea><wicri:noRegion>Sapporo</wicri:noRegion></affiliation></author><author><name sortKey="Kudo, H" sort="Kudo, H" uniqKey="Kudo H" first="H" last="Kudo">H. Kudo</name></author><author><name sortKey="Sugimoto, T" sort="Sugimoto, T" uniqKey="Sugimoto T" first="T" last="Sugimoto">T. Sugimoto</name></author><author><name sortKey="Shikata, E" sort="Shikata, E" uniqKey="Shikata E" first="E" last="Shikata">E. Shikata</name></author></analytic><series><title level="j">Journal of virological methods</title><idno type="ISSN">0166-0934</idno><imprint><date when="1988" type="published">1988</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Base Sequence (MeSH)</term><term>Nucleic Acid Hybridization (MeSH)</term><term>Oligodeoxyribonucleotides (MeSH)</term><term>Plant Viruses (genetics)</term><term>Plant Viruses (isolation & purification)</term><term>RNA, Viral (genetics)</term><term>Species Specificity (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN viral (génétique)</term><term>Hybridation d'acides nucléiques (MeSH)</term><term>Oligodésoxyribonucléotides (MeSH)</term><term>Spécificité d'espèce (MeSH)</term><term>Séquence nucléotidique (MeSH)</term><term>Virus des plantes (génétique)</term><term>Virus des plantes (isolement et purification)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Viral</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Oligodeoxyribonucleotides</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Plant Viruses</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN viral</term><term>Virus des plantes</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Plant Viruses</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Virus des plantes</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Nucleic Acid Hybridization</term><term>Species Specificity</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Hybridation d'acides nucléiques</term><term>Oligodésoxyribonucléotides</term><term>Spécificité d'espèce</term><term>Séquence nucléotidique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Four species of synthetic oligonucleotide probes for the diagnosis of hop stunt viroid (HSV) and citrus exocortis viroid (CEV) were devised. Probe HSV-1 detected all the members of HSV group, such as HSV-hop, HSV-grapevine, HSV-cucumber, HSV-citrus and a viroid-like RNA isolated from plum trees affected by plum dapple fruit disease. Probe HSV-2 discriminated HSV-grapevine from the other members of HSV group. HSV-hop and HSV-grapevine consist of the same numbers of nucleotides, with only one nucleotide exchange. It was also shown that the two viroids were indistinguishable by their biological and physicochemical properties. However, by using probe HSV-2, HSV-hop and HSV-grapevine were apparently differentiated. Probe CEV-1 detected all the members of potato spindle tuber viroid (PSTV) group, such as PSTV, CEV and chrysanthemum stunt viroid (CSV). Probe CEV-2 discriminated CEV from the other members of PSTV group. It is thus emphasized that synthetic oligonucleotide probes are useful for the diagnosis of viroids and their related strains. It was discussed that the method can be used for the diagnosis of viruses and their related strains.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">3366851</PMID><DateCompleted><Year>1988</Year><Month>06</Month><Day>16</Day></DateCompleted><DateRevised><Year>2019</Year><Month>08</Month><Day>28</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0166-0934</ISSN><JournalIssue CitedMedium="Print"><Volume>19</Volume><Issue>2</Issue><PubDate><Year>1988</Year><Month>Feb</Month></PubDate></JournalIssue><Title>Journal of virological methods</Title><ISOAbbreviation>J Virol Methods</ISOAbbreviation></Journal><ArticleTitle>Synthetic oligonucleotide hybridization probes to diagnose hop stunt viroid strains and citrus exocortis viroid.</ArticleTitle><Pagination><MedlinePgn>109-19</MedlinePgn></Pagination><Abstract><AbstractText>Four species of synthetic oligonucleotide probes for the diagnosis of hop stunt viroid (HSV) and citrus exocortis viroid (CEV) were devised. Probe HSV-1 detected all the members of HSV group, such as HSV-hop, HSV-grapevine, HSV-cucumber, HSV-citrus and a viroid-like RNA isolated from plum trees affected by plum dapple fruit disease. Probe HSV-2 discriminated HSV-grapevine from the other members of HSV group. HSV-hop and HSV-grapevine consist of the same numbers of nucleotides, with only one nucleotide exchange. It was also shown that the two viroids were indistinguishable by their biological and physicochemical properties. However, by using probe HSV-2, HSV-hop and HSV-grapevine were apparently differentiated. Probe CEV-1 detected all the members of potato spindle tuber viroid (PSTV) group, such as PSTV, CEV and chrysanthemum stunt viroid (CSV). Probe CEV-2 discriminated CEV from the other members of PSTV group. It is thus emphasized that synthetic oligonucleotide probes are useful for the diagnosis of viroids and their related strains. It was discussed that the method can be used for the diagnosis of viruses and their related strains.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Sano</LastName><ForeName>T</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Department of Botany, Hokkaido University, Sapporo, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kudo</LastName><ForeName>H</ForeName><Initials>H</Initials></Author><Author ValidYN="Y"><LastName>Sugimoto</LastName><ForeName>T</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Shikata</LastName><ForeName>E</ForeName><Initials>E</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>J Virol Methods</MedlineTA><NlmUniqueID>8005839</NlmUniqueID><ISSNLinking>0166-0934</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D009838">Oligodeoxyribonucleotides</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012367">RNA, Viral</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009693" MajorTopicYN="N">Nucleic Acid Hybridization</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009838" MajorTopicYN="N">Oligodeoxyribonucleotides</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010942" MajorTopicYN="N">Plant Viruses</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012367" MajorTopicYN="N">RNA, Viral</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013045" MajorTopicYN="N">Species Specificity</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>1988</Year><Month>2</Month><Day>1</Day></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>1988</Year><Month>2</Month><Day>1</Day><Hour>0</Hour><Minute>1</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>1988</Year><Month>2</Month><Day>1</Day><Hour>0</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">3366851</ArticleId><ArticleId IdType="pii">0166-0934(88)90154-1</ArticleId><ArticleId IdType="doi">10.1016/0166-0934(88)90154-1</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Japon</li></country></list><tree><noCountry><name sortKey="Kudo, H" sort="Kudo, H" uniqKey="Kudo H" first="H" last="Kudo">H. Kudo</name><name sortKey="Shikata, E" sort="Shikata, E" uniqKey="Shikata E" first="E" last="Shikata">E. Shikata</name><name sortKey="Sugimoto, T" sort="Sugimoto, T" uniqKey="Sugimoto T" first="T" last="Sugimoto">T. Sugimoto</name></noCountry><country name="Japon"><noRegion><name sortKey="Sano, T" sort="Sano, T" uniqKey="Sano T" first="T" last="Sano">T. Sano</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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